genewise output
Score 283.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000649_2.0    4 MRWLPFSALLLWALCLHSASA-DNNGVKKMKMQFATGPLLKFQI      
                     M+WL FS L+L    L  A+A D++GVKKMKMQFATGPLLKFQI      
                     MKWLRFSVLVLGFFSLCCATAGDSSGVKKMKMQFATGPLLKFQI      
OMLM01001838.1-53119 aattcttgcgtgtttcttgagggaaggaaaaactgagcccatca      
                     tagtgtcttttgttctggcccgagggtaatatatccgcttatat      
                     gggagtggctggtcggcccattccttgggggggtggaatcgtga      


SPP00000649_2.0   47                           VSXGYKRVFEEYTQALYQRYPDI 
                                               +SXGYKRVFEEYTQALYQRYPDI 
                                C:C[tgc]       ISXGYKRVFEEYTQALYQRYPDI 
OMLM01001838.1-52987 TGGTGAGCT  Intron 1   CAGCattgtacgtggtacgctcctcga 
                       <2-----[52985:52061]-2> tcggaagttaaacactaagacat 
                                               tcagcgggtggcggcgcggcacc 


SPP00000649_2.0   71 RIEGENYLPLPLY                          HIASFLSMFK 
                     RIEGENYLP+P+Y                          HIASFLSMFK 
                     RIEGENYLPMPVY           R:R[cga]       HIASFLSMFK 
OMLM01001838.1-51990 cagggatccacgtCGGTAAGAG  Intron 2   CAGAcagttttata 
                     gtagaaatctcta  <2-----[51949:51279]-2> atccttctta 
                     ctaggcctagcct                          cttccgtgca 


SPP00000649_2.0   95 LLLIGVIILGKDPFALCGMQAPGIWVWSQENK                  
                     LL+IG+II+G+DPFAL GMQAPGIW WSQ NK                  
                     LLVIGMIIIGRDPFALVGMQAPGIWEWSQGNK                  
OMLM01001838.1-51247 ccgagaaaagagctgcggacgcgatgtacgaa                  
                     ttttgttttggactcttgtaccgtgaggagaa                  
                     gggtggtccagcgcctttggcaccgagcgatg                  


SPP00000649_2.0  127                        IYACMMVFFFSNMIENQCMSTGAFEI 
                                            IYACMMVFFFSNMIENQ MSTGAFEI 
                                            IYACMMVFFFSNMIENQLMSTGAFEI 
OMLM01001838.1-51151 GTAAGTG  Intron 3   CAGatgtaagtttaaaagactataggtga 
                     <0-----[51151:50665]-0>tacgttttttgattaaattccgctat 
                                            ttccgggtccctgtacgagtaattat 


SPP00000649_2.0  153 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
OMLM01001838.1-50586 ataGGTAAGTC  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[50576:50068]-1>  tctgcatacgatcctaatta 
                     aat                          gagggaggatctccgggtga 


SPP00000649_2.0  177 IL                                                
                     IL                                                
                     IL                                                
OMLM01001838.1-50005 ac                                                
                     tt                                                
                     cg                                                


//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>OMLM01001838.1:subseq(39446,84419).pep
MKWLRFSVLVLGFFSLCCATAGDSSGVKKMKMQFATGPLLKFQICISXGYKRVFEEYTQA
LYQRYPDIRIEGENYLPMPVYRHIASFLSMFKLLVIGMIIIGRDPFALVGMQAPGIWEWS
QGNKIYACMMVFFFSNMIENQLMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL
//
>OMLM01001838.1:subseq(39446,84419).[53119:49998].sp
ATGAAGTGGTTACGGTTTTCGGTGCTCGTTTTGGGGTTTTTCTCGCTGTGCTGCGCCACA
GCTGGTGACAGCAGTGGTGTGAAGAAGATGAAGATGCAGTTTGCGACGGGACCACTTCTC
AAGTTTCAGATATGCATTTCCTGAGGGTACAAGCGGGTGTTTGAGGAGTACACGCAGGCC
CTGTACCAGCGGTACCCAGACATCCGCATTGAAGGGGAGAACTACCTTCCAATGCCCGTC
TATCGACACATTGCTTCCTTCTTGTCTATGTTCAAACTGCTGGTGATTGGGATGATTATC
ATCGGAAGGGACCCGTTCGCCCTTGTTGGTATGCAGGCCCCAGGCATCTGGGAATGGAGC
CAGGGAAATAAGATTTATGCCTGCATGATGGTGTTTTTCTTCAGCAATATGATTGAAAAC
CAGTTAATGTCTACAGGAGCTTTTGAAATTACATTAAATGATGTGCCAGTGTGGTCGAAA
CTGGAGTCAGGTCACCTTCCCTCCATGCAGCAGCTTGTGCAAATCCTG
//
OMLM01001838.1:subseq(39446,84419)	GeneWise	match	53119	50000	283.67	-	.	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	cds	53119	52986	0.00	-	0	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	intron	52985	52061	0.00	-	.	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	cds	52060	51950	0.00	-	1	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	intron	51949	51279	0.00	-	.	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	cds	51278	51152	0.00	-	1	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	intron	51151	50665	0.00	-	.	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	cds	50664	50577	0.00	-	0	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	intron	50576	50068	0.00	-	.	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
OMLM01001838.1:subseq(39446,84419)	GeneWise	cds	50067	50000	0.00	-	2	OMLM01001838.1:subseq(39446,84419)-genewise-prediction-1
//